Specific zinc finger-induced methylation of PD-L1 promoter inhibits its expression

FEBS Open Bio. 2019 Jun;9(6):1063-1070. doi: 10.1002/2211-5463.12568. Epub 2019 May 14.

Abstract

DNA methylation of promoter regions is often associated with epigenetic silencing of gene expression, and DNA methyltransferase (DNMTs) has been used to suppress gene expression. In order to explore the synergistic roles of two methyltransferase members Dnmt3a and Dnmt1, we constructed expression plasmid that could express a recombinant DNMTs consisting of the C-terminal domains of both Dnmt3a and Dnmt1 fused to a zinc finger domain which binds to the PD-L1 promoter of human prostate cancer cells (DU145). Programmed death ligand 1 (PD-L1, B7-H1, CD-274) is a transmembrane protein widely expressed on antigen-presenting and other immune cells. The interaction of PD-L1 with its receptor PD-1 is considered an 'immune checkpoint' for possible cancer therapy. DU145 cells treated with the Dnmt3aC-1C plasmid showed significantly reduced expression of PD-L1 as compared to Dnmt3aC or Dnmt1C alone. Our results show that the fusion of Dnmt1 improves the methylation activity of Dnmt3a and enhances its biological functions. This combinatorial strategy can be used to better control PD-L1 expression to support cytotoxic T lymphocytes (CTL) response against tumors.

Keywords: DNA methylation; PD-L1; tumor; zinc finger.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • B7-H1 Antigen / antagonists & inhibitors
  • B7-H1 Antigen / genetics*
  • B7-H1 Antigen / metabolism
  • Binding Sites
  • Cell Line, Tumor
  • DNA (Cytosine-5-)-Methyltransferase 1 / genetics
  • DNA (Cytosine-5-)-Methyltransferase 1 / metabolism
  • DNA (Cytosine-5-)-Methyltransferases / genetics
  • DNA (Cytosine-5-)-Methyltransferases / metabolism
  • DNA Methylation / genetics*
  • DNA Methyltransferase 3A
  • Gene Expression Regulation, Neoplastic
  • Gene Silencing
  • Humans
  • Hydrogen Bonding
  • Male
  • Plasmids
  • Promoter Regions, Genetic*
  • Prostatic Neoplasms / genetics*
  • Prostatic Neoplasms / pathology*
  • Protein Binding
  • Protein Domains
  • Recombinant Proteins / pharmacology
  • Transduction, Genetic
  • Zinc Fingers / genetics*

Substances

  • B7-H1 Antigen
  • CD274 protein, human
  • DNMT3A protein, human
  • Recombinant Proteins
  • DNA (Cytosine-5-)-Methyltransferase 1
  • DNA (Cytosine-5-)-Methyltransferases
  • DNA Methyltransferase 3A
  • DNMT1 protein, human

Associated data

  • PDB/2I13
  • GENBANK/NM_175629.1
  • GENBANK/NM_001379.2