Application of single-cell RNA sequencing methodologies in understanding haematopoiesis and immunology

Essays Biochem. 2019 Jul 3;63(2):217-225. doi: 10.1042/EBC20180072. Print 2019 Jul 3.

Abstract

The blood and immune system are characterised by utmost diversity in its cellular components. This heterogeneity can solely be resolved with the application of single-cell technologies that enable precise examination of cell-to-cell variation. Single-cell transcriptomics is continuously pushing forward our understanding of processes driving haematopoiesis and immune responses in physiological settings as well as in disease. Remarkably, in the last five years, a number of studies involving single-cell RNA sequencing (scRNA-seq) allowed the discovery of new immune cell types and revealed that haematopoiesis is a continuous rather than a stepwise process, thus challenging the classical haematopoietic lineage tree model. This review summarises the most recent studies which applied scRNA-seq to answer outstanding questions in the fields of haematology and immunology and discusses the present challenges and future directions.

Keywords: Single-cell RNA sequencing; haematopoiesis; immunology.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Cells, Cultured
  • Hematopoiesis / genetics*
  • Humans
  • Immune System / cytology*
  • Mice
  • RNA, Small Cytoplasmic / genetics*
  • Sequence Analysis, RNA / methods*
  • Single-Cell Analysis / methods*

Substances

  • RNA, Small Cytoplasmic