Structures of N-terminally processed KRAS provide insight into the role of N-acetylation

Sci Rep. 2019 Jul 19;9(1):10512. doi: 10.1038/s41598-019-46846-w.

Abstract

Although post-translational modification of the C-terminus of RAS has been studied extensively, little is known about N-terminal processing. Mass spectrometric characterization of KRAS expressed in mammalian cells showed cleavage of the initiator methionine (iMet) and N-acetylation of the nascent N-terminus. Interestingly, structural studies on GDP- and GMPPNP-bound KRAS lacking the iMet and N-acetylation resulted in Mg2+-free structures of KRAS with flexible N-termini. In the Mg2+-free KRAS-GDP structure, the flexible N-terminus causes conformational changes in the interswitch region resulting in a fully open conformation of switch I. In the Mg2+-free KRAS-GMPPNP structure, the flexible N-terminus causes conformational changes around residue A59 resulting in the loss of Mg2+ and switch I in the inactive state 1 conformation. Structural studies on N-acetylated KRAS-GDP lacking the iMet revealed the presence of Mg2+ and a conformation of switch regions also observed in the structure of GDP-bound unprocessed KRAS with the iMet. In the absence of the iMet, the N-acetyl group interacts with the central beta-sheet and stabilizes the N-terminus and the switch regions. These results suggest there is crosstalk between the N-terminus and the Mg2+ binding site, and that N-acetylation plays an important role by stabilizing the N-terminus of RAS upon excision of the iMet.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Acetylation
  • Amino Acid Sequence
  • Catalytic Domain
  • Crystallography, X-Ray
  • Guanosine Diphosphate / metabolism
  • Guanylyl Imidodiphosphate / metabolism
  • Humans
  • Hydrogen Bonding
  • Magnesium / metabolism
  • Models, Molecular
  • Protein Binding
  • Protein Conformation
  • Protein Processing, Post-Translational*
  • Proto-Oncogene Proteins p21(ras) / chemistry*
  • Proto-Oncogene Proteins p21(ras) / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Structure-Activity Relationship

Substances

  • KRAS protein, human
  • Guanosine Diphosphate
  • Guanylyl Imidodiphosphate
  • HRAS protein, human
  • Proto-Oncogene Proteins p21(ras)
  • Magnesium