Identification of Adenosine-to-Inosine RNA Editing with Acrylonitrile Reagents

Org Lett. 2019 Oct 4;21(19):7948-7951. doi: 10.1021/acs.orglett.9b02929. Epub 2019 Sep 13.

Abstract

New chemical probes have been designed to facilitate the identification of adenosine-to-inosine (A-to-I) edited RNAs. These reagents combine a conjugate acceptor for selective inosine covalent modification with functional groups for bioorthogonal biotinylation. The resulting biotinylated RNA was enriched and verified with RT-qPCR. This powerful chemical approach provides new opportunities to identify and quantify A-to-I editing sites.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acrylonitrile / chemistry*
  • Acrylonitrile / metabolism
  • Adenosine / chemistry*
  • Adenosine / metabolism
  • Biotinylation
  • Inosine / chemistry*
  • Inosine / metabolism
  • Nucleic Acid Conformation
  • RNA / chemistry*
  • RNA / metabolism
  • RNA Editing

Substances

  • Inosine
  • RNA
  • Adenosine
  • Acrylonitrile