Illuminating the virus life cycle with single-molecule FRET imaging

Adv Virus Res. 2019:105:239-273. doi: 10.1016/bs.aivir.2019.07.004. Epub 2019 Aug 20.

Abstract

Single-molecule Förster resonance energy transfer (smFRET) imaging has emerged as a powerful tool to probe conformational dynamics of viral proteins, identify novel structural intermediates that are hiding in averaging population-based measurements, permit access to the energetics of transitions and as such to the precise molecular mechanisms of viral replication. One strength of smFRET is the capability of characterizing biological molecules in their fully hydrated/native state, which are not necessarily available to other structural methods. Elegant experimental design for physiologically relevant conditions, such as intact virions, has permitted the detection of previously unknown conformational states of viral glycoproteins, revealed asymmetric intermediates, and allowed access to the real-time imaging of conformational changes during viral fusion. As more laboratories are applying smFRET, our understanding of the molecular mechanisms and the dynamic nature of viral proteins throughout the virus life cycle are predicted to improve and assist the development of novel antiviral therapies and vaccine design.

Keywords: Conformational dynamics; Envelope glycoproteins; Genome packaging; Reverse transcriptase; Single-molecule FRET; Structure; Virus assembly; Virus entry; Virus life cycle.

MeSH terms

  • Fluorescence Resonance Energy Transfer / methods*
  • HIV-1 / chemistry
  • HIV-1 / physiology
  • Protein Conformation
  • Single Molecule Imaging / methods*
  • Virus Internalization
  • env Gene Products, Human Immunodeficiency Virus / chemistry*
  • env Gene Products, Human Immunodeficiency Virus / metabolism

Substances

  • env Gene Products, Human Immunodeficiency Virus