Elucidation of a sialic acid metabolism pathway in mucus-foraging Ruminococcus gnavus unravels mechanisms of bacterial adaptation to the gut

Nat Microbiol. 2019 Dec;4(12):2393-2404. doi: 10.1038/s41564-019-0590-7. Epub 2019 Oct 21.

Abstract

Sialic acid (N-acetylneuraminic acid (Neu5Ac)) is commonly found in the terminal location of colonic mucin glycans where it is a much-coveted nutrient for gut bacteria, including Ruminococcus gnavus. R. gnavus is part of the healthy gut microbiota in humans, but it is disproportionately represented in diseases. There is therefore a need to understand the molecular mechanisms that underpin the adaptation of R. gnavus to the gut. Previous in vitro research has demonstrated that the mucin-glycan-foraging strategy of R. gnavus is strain dependent and is associated with the expression of an intramolecular trans-sialidase, which releases 2,7-anhydro-Neu5Ac, rather than Neu5Ac, from mucins. Here, we unravelled the metabolism pathway of 2,7-anhydro-Neu5Ac in R. gnavus that is underpinned by the exquisite specificity of the sialic transporter for 2,7-anhydro-Neu5Ac and by the action of an oxidoreductase that converts 2,7-anhydro-Neu5Ac into Neu5Ac, which then becomes a substrate of a Neu5Ac-specific aldolase. Having generated an R. gnavus nan-cluster deletion mutant that lost the ability to grow on sialylated substrates, we showed that-in gnotobiotic mice colonized with R. gnavus wild-type (WT) and mutant strains-the fitness of the nan mutant was significantly impaired, with a reduced ability to colonize the mucus layer. Overall, we revealed a unique sialic acid pathway in bacteria that has important implications for the spatial adaptation of mucin-foraging gut symbionts in health and disease.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptation, Physiological*
  • Animals
  • Clostridiales
  • Gastrointestinal Microbiome / physiology*
  • Glycoproteins
  • Humans
  • Metabolic Networks and Pathways / genetics
  • Metabolic Networks and Pathways / physiology
  • Mice
  • Mice, Inbred C57BL
  • Mucins / metabolism
  • Mucus / metabolism*
  • N-Acetylneuraminic Acid / analogs & derivatives
  • N-Acetylneuraminic Acid / metabolism*
  • Neuraminidase
  • Oxo-Acid-Lyases / metabolism
  • Polysaccharides / metabolism
  • Recombinant Proteins
  • Ruminococcus / enzymology
  • Ruminococcus / genetics
  • Ruminococcus / metabolism*

Substances

  • Glycoproteins
  • Mucins
  • Polysaccharides
  • Recombinant Proteins
  • 2,7-anhydro-N-acetylneuraminic acid
  • trans-sialidase
  • Neuraminidase
  • Oxo-Acid-Lyases
  • N-acetylneuraminate lyase
  • N-Acetylneuraminic Acid

Supplementary concepts

  • Ruminococcus gnavus