Automatic annotation of protein residues in published papers

Acta Crystallogr F Struct Biol Commun. 2019 Nov 1;75(Pt 11):665-672. doi: 10.1107/S2053230X1901210X. Epub 2019 Nov 5.

Abstract

This work presents an annotation tool that automatically locates mentions of particular amino-acid residues in published papers and identifies the protein concerned. These matches can be provided in context or in a searchable format in order for researchers to better use the existing and future literature.

Keywords: NLP; named entity recognizer; natural language processing; residue.

MeSH terms

  • Amino Acids / chemistry
  • Automation
  • Molecular Sequence Annotation*
  • Mutation / genetics
  • Proteins / chemistry*
  • Proteins / genetics
  • Publications*
  • Software

Substances

  • Amino Acids
  • Proteins