28 novel mutations identified from 33 Chinese patients with cilia-related kidney disorders

Clin Chim Acta. 2020 Feb:501:207-215. doi: 10.1016/j.cca.2019.10.040. Epub 2019 Nov 13.

Abstract

Background: Cilia play an important role in cellular signaling pathways. Defective ciliary function causes a variety of disorders involve retina, skeleton, liver, kidney or others. Cilia-related kidney disorders are characterized by cystic renal disease, nephronophthisis and renal failure in general.

Methods: In this study, we collected 33 families clinically suspected of cilia-related kidney disorders. Capture-based next-generation sequencing (NGS) of 88 related genes, Sanger sequencing, pedigree analysis and functional study were performed to analyze their genetic cause.

Results: 40 mutations in PKD1, PKD2, PKHD1, DYNC2H1 and TMEM67 genes were identified from 27 of 33 affected families. 70% (28/40) of the mutations were first found in patients. We reported a very early-onset autosomal dominant polycystic kidney disease (ADPKD) family caused by a novel heterozygous PKD1 mutation; another fetus with DYNC2H1 compound heterozygous missense mutations showed mainly kidney dysplasia instead of skeletal abnormalities; and a novel PKD1 mutation, c.12445-3C > G, was confirmed to cause two wrong splicing modes. As for previously reported mutations, such as PKD1, c.6395 T > G (p.F2132C) and c.6868G > T (p.D2290Y), we had new and different findings.

Conclusion: The findings provided new references for genotype-phenotype analyses and broadened the mutation spectrum of detected genes, which were significantly valuable for prenatal diagnosis and genetic counseling.

Keywords: Ciliopathy; Molecular genetics; PKD; Primary cilia; Renal cyst.

MeSH terms

  • Adult
  • Child, Preschool
  • China
  • Cytoplasmic Dyneins / blood
  • Cytoplasmic Dyneins / genetics
  • DNA Mutational Analysis
  • Female
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Infant
  • Kidney Diseases, Cystic / blood
  • Kidney Diseases, Cystic / genetics*
  • Male
  • Membrane Proteins / blood
  • Membrane Proteins / genetics
  • Middle Aged
  • Mutation*
  • Phenotype
  • Pregnancy
  • Receptors, Cell Surface / blood
  • Receptors, Cell Surface / genetics
  • Renal Insufficiency / blood
  • Renal Insufficiency / genetics*
  • TRPP Cation Channels / blood
  • TRPP Cation Channels / genetics
  • Young Adult

Substances

  • DYNC2H1 protein, human
  • Membrane Proteins
  • PKHD1 protein, human
  • Receptors, Cell Surface
  • TMEM67 protein, human
  • TRPP Cation Channels
  • polycystic kidney disease 1 protein
  • polycystic kidney disease 2 protein
  • Cytoplasmic Dyneins