The La-related proteins: structures and interactions of a versatile superfamily of RNA-binding proteins

RNA Biol. 2021 Feb;18(2):178-193. doi: 10.1080/15476286.2019.1695712. Epub 2019 Dec 3.

Abstract

The La-related proteins (LaRPs) are an ancient superfamily of RNA-binding proteins orchestrating the major fates of RNA, from processing and maturation to regulation of mRNA translation. LaRPs are instrumental in modulating complex assemblies where the RNA is bound, folded, processed, escorted and presented to the functional effectors often through recruitment of protein partners. This intricate web of protein-RNA and protein-protein interactions is enabled by the modular nature of the LaRPs, comprising several structured domains connected by flexible linkers, and other sequences lacking recognizable folded motifs. Recent structures, together with biochemical and biophysical studies, have provided insights into how each LaRP family has evolved unique mechanisms of RNA recognition, not only through the conserved RNA-binding unit, the La-module, but also mediated by other family-specific motifs. Furthermore, in a series of unexpected twists and turns, they have revealed that the dynamic and conformational interplay of multi-structured domains and disordered regions operate in unison to achieve RNA substrate discrimination. This review proposes a perspective of our current knowledge of the structure-function relationship of the LaRP superfamily.

Keywords: La-module; La-related proteins; LaRP; RNA biology; RNA-binding proteins; RRM; structure-function relationship.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Humans
  • Multigene Family
  • Protein Binding
  • Protein Conformation
  • Protein Interaction Domains and Motifs
  • RNA / chemistry
  • RNA / metabolism
  • RNA Cleavage
  • RNA-Binding Proteins / chemistry*
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism*
  • Ribonucleoproteins / chemistry*
  • Ribonucleoproteins / genetics
  • Ribonucleoproteins / metabolism*
  • Ribonucleoside Diphosphate Reductase / chemistry
  • Ribonucleoside Diphosphate Reductase / metabolism
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • RNA-Binding Proteins
  • Ribonucleoproteins
  • RNA
  • RRM1 protein, human
  • Ribonucleoside Diphosphate Reductase