Heterocycle amide isosteres: An approach to overcoming resistance for HIV-1 integrase strand transfer inhibitors

Bioorg Med Chem Lett. 2020 Feb 1;30(3):126784. doi: 10.1016/j.bmcl.2019.126784. Epub 2019 Nov 9.

Abstract

A series of heterocyclic pyrimidinedione-based HIV-1 integrase inhibitors was prepared and screened for activity against purified integrase enzyme and/or viruses modified with the following mutations within integrase: Q148R, Q148H/G140S and N155H. These are mutations that result in resistance to the first generation integrase inhibitors raltegravir and elvitegravir. Based on consideration of drug-target interactions, an approach was undertaken to replace the amide moiety of the first generation pyrimidinedione inhibitor with azole heterocycles that could retain potency against these key resistance mutations. An imidazole moiety was found to be the optimal amide substitute and the observed activity was rationalized with the use of calculated properties and modeling. Rat pharmacokinetic (PK) studies of the lead imidazole compounds demonstrated moderate clearance and moderate exposure.

Keywords: HIV; HIV Integrase; Integrase inhibitor; Pyrimidinedione; Strand transfer inhibitor.

MeSH terms

  • Amides / chemistry*
  • Animals
  • Binding Sites
  • Catalytic Domain
  • Drug Resistance, Viral / drug effects
  • HIV Integrase / chemistry*
  • HIV Integrase / genetics
  • HIV Integrase / metabolism
  • HIV Integrase Inhibitors / chemistry*
  • HIV Integrase Inhibitors / metabolism
  • HIV Integrase Inhibitors / pharmacology
  • HIV-1 / drug effects
  • HIV-1 / enzymology*
  • Half-Life
  • Heterocyclic Compounds, 3-Ring / chemistry*
  • Heterocyclic Compounds, 3-Ring / metabolism
  • Heterocyclic Compounds, 3-Ring / pharmacology
  • Humans
  • Molecular Dynamics Simulation
  • Mutation
  • Rats
  • Structure-Activity Relationship

Substances

  • Amides
  • HIV Integrase Inhibitors
  • Heterocyclic Compounds, 3-Ring
  • HIV Integrase
  • p31 integrase protein, Human immunodeficiency virus 1