Active Benzimidazole Derivatives Targeting the MmpL3 Transporter in Mycobacterium abscessus

ACS Infect Dis. 2020 Feb 14;6(2):324-337. doi: 10.1021/acsinfecdis.9b00389. Epub 2020 Jan 7.

Abstract

The prevalence of pulmonary infections due to nontuberculous mycobacteria such as Mycobacterium abscessus has been increasing and surpassing tuberculosis (TB) in some industrialized countries. Because of intrinsic resistance to most antibiotics that drastically limits conventional chemotherapeutic treatment options, new anti-M. abscessus therapeutics are urgently needed against this emerging pathogen. Extensive screening of a library of benzimidazole derivatives that were previously shown to be active against Mycobacterium tuberculosis led to the identification of a lead compound exhibiting very potent in vitro activity against a wide panel of M. abscessus clinical strains. Designated EJMCh-6, this compound, a 2-(2-cyclohexylethyl)-5,6-dimethyl-1H-benzo[d]imidazole), also exerted very strong activity against intramacrophage-residing M. abscessus. Moreover, the treatment of infected zebrafish embryos with EJMCh-6 was correlated with significantly increased embryo survival and a decrease in the bacterial burden as compared to those for untreated fish. Insights into the mechanism of action were inferred from the generation of spontaneous benzimidazole-resistant strains and the identification of a large set of missense mutations in MmpL3, the mycolic acid transporter in mycobacteria. Overexpression of the mutated mmpL3 alleles in a susceptible M. abscessus strain was associated with high resistance levels to EJMCh-6 and to other known MmpL3 inhibitors. Mapping the mutations conferring resistance on an MmpL3 three-dimensional homology model defined a potential EJMCh-6-binding cavity. These data emphasize a yet unexploited chemical structure class against M. abscessus with promising translational development for the treatment of M. abscessus lung diseases.

Keywords: MmpL3; Mycobacterium abscessus; benzimidazole; mycolic acid; therapeutic activity; zebrafish.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antitubercular Agents / chemistry
  • Antitubercular Agents / pharmacology*
  • Bacterial Proteins / antagonists & inhibitors*
  • Bacterial Proteins / genetics
  • Benzimidazoles / chemistry*
  • Benzimidazoles / pharmacology*
  • Biological Transport
  • Drug Resistance, Bacterial / genetics
  • Humans
  • Lung Diseases / drug therapy
  • Lung Diseases / microbiology
  • Macrophages / drug effects
  • Macrophages / microbiology
  • Membrane Transport Proteins / genetics
  • Microbial Sensitivity Tests
  • Mutation
  • Mycobacterium Infections, Nontuberculous / microbiology
  • Mycobacterium abscessus / drug effects*
  • Structure-Activity Relationship
  • THP-1 Cells
  • Tuberculosis / microbiology
  • Zebrafish / microbiology
  • Zebrafish / physiology

Substances

  • Antitubercular Agents
  • Bacterial Proteins
  • Benzimidazoles
  • Membrane Transport Proteins
  • MmpL3 protein, Mycobacterium tuberculosis