Molecular design, synthesis, and biological evaluation of bisamide derivatives as cyclophilin A inhibitors for HCV treatment

Eur J Med Chem. 2020 Feb 15:188:112031. doi: 10.1016/j.ejmech.2019.112031. Epub 2020 Jan 2.

Abstract

Hepatitis C virus (HCV) is a major cause of end-stage liver diseases. Direct-acting antivirals (DAAs), including inhibitors of nonstructural proteins (NS3/4A protease, NS5A, and NS5B polymerase), represent key components of anti-HCV treatment. However, some DAAs are associated with increased drug resistance and undesired side effects. Previous reports have shown that bisamides could be a novel class of cyclophilin A (CypA) inhibitors for treating HCV as a member of combinational therapies. To fully elucidate structure-activity relationships of bisamide derivatives and find a better hit compound with diverse binding modes, 16 biamides were designed with the help of docking program. They were then synthesized using one-pot four-component Ugi reaction. 7e with selectivity index of more than 18.9 (50% effective concentration of 5.3 μM, but no cytotoxicity at 100 μM) and unique binding mode that could be dived into gatekeeper pocket was selected as a new hit compound. Surface plasmon resonance experiments revealed that 7e is able to bind to CypA with a KD of 3.66 μM. Taken together, these results suggest that 7e as a CypA inhibitor could be used as an alternative anti-HCV agent in combinational therapy in the future.

Keywords: Bisamide; Cyclophilin A inhibitor; Hepatitis C virus; Molecular modeling; Ugi reaction.

MeSH terms

  • Amides / chemical synthesis
  • Amides / chemistry
  • Amides / pharmacology*
  • Antiviral Agents / chemical synthesis
  • Antiviral Agents / chemistry
  • Antiviral Agents / pharmacology*
  • Cell Survival / drug effects
  • Cyclophilin A / antagonists & inhibitors*
  • Cyclophilin A / metabolism
  • Dose-Response Relationship, Drug
  • Drug Design*
  • Hepacivirus / drug effects*
  • Hepacivirus / metabolism
  • Hepatitis C / drug therapy*
  • Hepatitis C / metabolism
  • Humans
  • Microbial Sensitivity Tests
  • Molecular Docking Simulation
  • Molecular Structure
  • Structure-Activity Relationship
  • Surface Plasmon Resonance
  • Tumor Cells, Cultured

Substances

  • Amides
  • Antiviral Agents
  • Cyclophilin A