Multiple principal sigma factor homologs in eubacteria: identification of the "rpoD box"

Science. 1988 Nov 18;242(4881):1040-2. doi: 10.1126/science.3194753.

Abstract

Genes for the principal sigma factor (rpoD genes) of various eubacteria were identified with a synthetic oligonucleotide probe corresponding to a conserved sequence in rpoD gene products of Escherichia coli and Bacillus subtilis. Multiple rpoD homologs were found in the strains of Micrococcus, Pseudomonas, and Streptomyces, whereas single genes were detected in E. coli, B. subtilis, and Staphylococcus aureus. The four rpoD homologs of Streptomyces coelicolor A3(2) were cloned and sequenced. A homologous portion with 13 amino acids was found in the rpoD genes of S. coelicolor A3(2), E. coli, and B. subtilis and was named the "rpoD box."

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacteria / genetics*
  • DNA Probes
  • DNA, Bacterial / genetics
  • DNA-Binding Proteins / genetics*
  • Genes, Bacterial*
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Sequence Homology, Nucleic Acid
  • Sigma Factor / genetics*
  • Transcription Factors / genetics*

Substances

  • DNA Probes
  • DNA, Bacterial
  • DNA-Binding Proteins
  • Sigma Factor
  • Transcription Factors