DNA unwinding mechanism of a eukaryotic replicative CMG helicase

Nat Commun. 2020 Feb 4;11(1):688. doi: 10.1038/s41467-020-14577-6.

Abstract

High-resolution structures have not been reported for replicative helicases at a replication fork at atomic resolution, a prerequisite to understanding the unwinding mechanism. The eukaryotic replicative CMG (Cdc45, Mcm2-7, GINS) helicase contains a Mcm2-7 motor ring, with the N-tier ring in front and the C-tier motor ring behind. The N-tier ring is structurally divided into a zinc finger (ZF) sub-ring followed by the oligosaccharide/oligonucleotide-binding (OB) fold ring. Here we report the cryo-EM structure of CMG on forked DNA at 3.9 Å, revealing that parental DNA enters the ZF sub-ring and strand separation occurs at the bottom of the ZF sub-ring, where the lagging strand is blocked and diverted sideways by OB hairpin-loops of Mcm3, Mcm4, Mcm6, and Mcm7. Thus, instead of employing a specific steric exclusion process, or even a separation pin, unwinding is achieved via a "dam-and-diversion tunnel" mechanism that does not require specific protein-DNA interaction. The C-tier motor ring contains spirally configured PS1 and H2I loops of Mcms 2, 3, 5, 6 that translocate on the spirally-configured leading strand, and thereby pull the preceding DNA segment through the diversion tunnel for strand separation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Cycle Proteins / chemistry
  • Cell Cycle Proteins / genetics
  • Cell Cycle Proteins / metabolism
  • DNA Replication*
  • DNA, Fungal / chemistry
  • DNA, Fungal / genetics
  • DNA, Fungal / metabolism
  • Minichromosome Maintenance Complex Component 3 / chemistry
  • Minichromosome Maintenance Complex Component 3 / genetics
  • Minichromosome Maintenance Complex Component 3 / metabolism
  • Minichromosome Maintenance Complex Component 4 / chemistry
  • Minichromosome Maintenance Complex Component 4 / genetics
  • Minichromosome Maintenance Complex Component 4 / metabolism
  • Minichromosome Maintenance Complex Component 6 / chemistry
  • Minichromosome Maintenance Complex Component 6 / genetics
  • Minichromosome Maintenance Complex Component 6 / metabolism
  • Minichromosome Maintenance Complex Component 7 / chemistry
  • Minichromosome Maintenance Complex Component 7 / genetics
  • Minichromosome Maintenance Complex Component 7 / metabolism
  • Saccharomyces cerevisiae / chemistry
  • Saccharomyces cerevisiae / enzymology*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae Proteins / chemistry
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism

Substances

  • Cell Cycle Proteins
  • DNA, Fungal
  • MCM5 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • MCM2 protein, S cerevisiae
  • MCM3 protein, S cerevisiae
  • MCM4 protein, S cerevisiae
  • MCM6 protein, S cerevisiae
  • MCM7 protein, S cerevisiae
  • Minichromosome Maintenance Complex Component 3
  • Minichromosome Maintenance Complex Component 4
  • Minichromosome Maintenance Complex Component 6
  • Minichromosome Maintenance Complex Component 7