A study of the B-Z transition of the AC-rich region of the repeat unit of a satellite DNA from Cebus by means of chemical probes

J Biol Chem. 1988 Aug 25;263(24):11826-32.

Abstract

The conformational changes induced by negative supercoiling in the AC-rich region of the repeat unit of a Cebus satellite DNA has been studied by chemical probes sensitive to alterations in DNA conformation. This region is constituted of a (GT/CA)n stretch (15 less than or equal to n less than or equal to 18) associated to a sequence rich in GT/CA. At high superhelical density, at least 100 base pairs in the AC-rich region adopt the Z conformation as judged by diethyl pyrocarbonate reactivity. This is confirmed by diethyl pyrocarbonate footprinting of the complex between antibodies to Z-DNA and the AC-rich region. Osmium tetroxide and hydroxylamine reveal some distortions of the Z double helix in the (GT/CA)n stretch also. The terminal T residues of the stretch are hyperreactive with osmium tetroxide; the terminal left C residues but not the terminal right C residues are hyperreactive with hydroxylamine. Substitution of a few base pairs in the middle of the (GT/CA)n stretch induces also some distortions of the Z double helix. In the GT/CA-rich sequence, distortion of the Z double helix is also supported by the hyperreactivity of osmium tetroxide with several T and C residues.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Composition
  • Base Sequence
  • Cebus
  • Chemical Phenomena
  • Chemistry
  • DNA, Satellite*
  • Diethyl Pyrocarbonate
  • Hydroxylamine
  • Hydroxylamines
  • Immunoassay
  • Molecular Sequence Data
  • Nucleic Acid Conformation*
  • Osmium Tetroxide
  • Repetitive Sequences, Nucleic Acid
  • Sulfuric Acid Esters

Substances

  • DNA, Satellite
  • Hydroxylamines
  • Sulfuric Acid Esters
  • Hydroxylamine
  • dimethyl sulfate
  • Diethyl Pyrocarbonate
  • Osmium Tetroxide

Associated data

  • GENBANK/J03907
  • GENBANK/M19455
  • GENBANK/M19456
  • GENBANK/M19457
  • GENBANK/M19458