Transcriptomic features of tumour-infiltrating CD4lowCD8high double positive αβ T cells in melanoma

Sci Rep. 2020 Apr 3;10(1):5900. doi: 10.1038/s41598-020-62664-x.

Abstract

Peripheral CD4+CD8+ double positive (DP) T cells are a phenotypically and functionally heterogeneous population depending on their origin and pathologic context. We previously identified among tumour infiltrating lymphocytes in melanoma, a tumour-reactive MHC class-I restricted CD4lowCD8high DP αβ T-cell subpopulation with CD4-like function. In this study, we used an in-depth comparative transriptomic analysis of intra-melanoma DP T cells and CD4 and CD8 single positive (SP) T cells, to better comprehend the origin of this DP phenotype, and define the transcriptomic signature of activated DP T cells. We observed that intra-melanoma DP T cells were transcriptome-wise closer to their CD8 SP T-cell counterparts in terms of number of genes differentially expressed (97 in common with CD8 SP T cells and 15 with CD4 SP T cells) but presented hallmarks of a transition to a CD4-like functional profile (CD40LG) with a decreased cytotoxic signature (KLRC1) in favour of an increased cytokine-receptor interaction signature (IL4, IL24, IL17A…). This unleashed CD4-like program could be the results of the observed unbalanced expression of the THPOK/Runx3 transcription factors in DP T cells. Overall, this study allow us to speculate that intra-melanoma DP T cells arise from CD8 SP T cells being reprogrammed to a helper function.

Publication types

  • Observational Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • CD4-Positive T-Lymphocytes / immunology
  • CD4-Positive T-Lymphocytes / metabolism
  • CD8-Positive T-Lymphocytes / immunology
  • CD8-Positive T-Lymphocytes / metabolism
  • Cell Plasticity / genetics
  • Cell Plasticity / immunology
  • Cellular Reprogramming / genetics
  • Cellular Reprogramming / immunology
  • Core Binding Factor Alpha 3 Subunit / metabolism
  • DNA-Binding Proteins / metabolism
  • Gene Expression Regulation, Neoplastic / immunology
  • Humans
  • Lymphocyte Activation
  • Lymphocytes, Tumor-Infiltrating / immunology*
  • Lymphocytes, Tumor-Infiltrating / metabolism
  • Melanoma / genetics
  • Melanoma / immunology*
  • Melanoma / secondary
  • Receptors, Antigen, T-Cell, alpha-beta / metabolism
  • Skin Neoplasms / genetics
  • Skin Neoplasms / immunology*
  • Skin Neoplasms / pathology
  • T-Lymphocyte Subsets / immunology*
  • T-Lymphocyte Subsets / metabolism
  • Transcription Factors / metabolism
  • Transcriptome / immunology*
  • Tumor Microenvironment / genetics
  • Tumor Microenvironment / immunology

Substances

  • Core Binding Factor Alpha 3 Subunit
  • DNA-Binding Proteins
  • Receptors, Antigen, T-Cell, alpha-beta
  • Runx3 protein, human
  • Transcription Factors
  • ZBTB7B protein, human