Shape selection and mis-assembly in viral capsid formation by elastic frustration

Elife. 2020 Apr 21:9:e52525. doi: 10.7554/eLife.52525.

Abstract

The successful assembly of a closed protein shell (or capsid) is a key step in the replication of viruses and in the production of artificial viral cages for bio/nanotechnological applications. During self-assembly, the favorable binding energy competes with the energetic cost of the growing edge and the elastic stresses generated due to the curvature of the capsid. As a result, incomplete structures such as open caps, cylindrical or ribbon-shaped shells may emerge, preventing the successful replication of viruses. Using elasticity theory and coarse-grained simulations, we analyze the conditions required for these processes to occur and their significance for empty virus self-assembly. We find that the outcome of the assembly can be recast into a universal phase diagram showing that viruses with high mechanical resistance cannot be self-assembled directly as spherical structures. The results of our study justify the need of a maturation step and suggest promising routes to hinder viral infections by inducing mis-assembly.

Keywords: brownian dynamics simulations; continuum elasticity theory; physics of living systems; self-assembly; virus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Capsid / metabolism*
  • Capsid Proteins / metabolism*
  • Computer Simulation*
  • Elasticity / physiology*
  • Virus Assembly / physiology*

Substances

  • Capsid Proteins