Pilot study and bioinformatics analysis of differentially expressed genes in adipose tissues of rats with excess dietary intake

Mol Med Rep. 2020 May;21(5):2063-2072. doi: 10.3892/mmr.2020.11012. Epub 2020 Mar 4.

Abstract

Excessive adipose tissue accumulation is an increasing health problem worldwide. The present study aimed to determine differentially expressed genes (DEGs) that are associated with the excessive accumulation of adipose tissues by PCR arrays in an excess dietary intake animal model. For this purpose, male Sprague Dawley rats were randomly assigned to 2 groups: Control (given an ordinary diet) and experimental (given twice the amount of the ordinary diet). After 2 months of feeding, the abdominal cavities of the rats from each group were opened, then subcutaneous and visceral adipose tissues were removed. The adipose tissues collected were then used for total RNA extraction and then reverse transcribed to cDNA, which was then used as a template to identify the DEGs of 84 transcripts for rat obesity by RT2 Profiler PCR Arrays. The results showed significant downregulation of bombesin‑like receptor 3 (BRS3) and uncoupling protein 1 (UCP1) in visceral adipose tissues of experimental rats compared with those of the control rats, and differential gene expression analysis showed an association with fat cell differentiation and regulation of triglyceride sequestration, as well as fatty acid binding. The gene expression patterns observed in the present study, which may be associated with peroxisome proliferator‑activated receptor‑γ (PPARG) on excessive visceral adipose tissue accumulation, may be useful in identifying a group of surrogate biomarkers for the early diet‑induced accumulation of visceral adipose tissue detection in humans. The biomarkers can also be the specific targets for drug development to reduce excessive visceral adipose tissue accumulation in the body and its associated diseases.

Keywords: animal model; differentially expressed gene; excess dietary intake; excessive adipose tissue accumulation; Pcr arrays; visceral adipose tissue.

MeSH terms

  • Adipose Tissue / metabolism*
  • Animals
  • Cell Differentiation / genetics
  • Computational Biology
  • Diet
  • Fatty Acids / metabolism
  • Gene Expression Regulation / genetics*
  • Gene Ontology
  • Humans
  • Intra-Abdominal Fat / metabolism
  • MCF-7 Cells
  • Microarray Analysis
  • Multigene Family
  • Obesity / metabolism*
  • PPAR gamma / genetics
  • PPAR gamma / metabolism
  • Pilot Projects
  • Polymerase Chain Reaction
  • Rats
  • Rats, Sprague-Dawley
  • Receptors, Bombesin / genetics
  • Receptors, Bombesin / metabolism*
  • Triglycerides / metabolism
  • Uncoupling Protein 1 / genetics
  • Uncoupling Protein 1 / metabolism*

Substances

  • Fatty Acids
  • PPAR gamma
  • PPAR gamma, rat
  • Receptors, Bombesin
  • Triglycerides
  • Ucp1 protein, rat
  • Uncoupling Protein 1
  • bombesin receptor subtype 3