Clearance and persistence of SARS-CoV-2 RNA in patients with COVID-19

J Med Virol. 2020 Oct;92(10):2227-2231. doi: 10.1002/jmv.26103. Epub 2020 Jun 19.

Abstract

Patients with coronavirus disease-2019 may be discharged based on clinical resolution of symptoms, and evidence for viral RNA clearance from the upper respiratory tract. Understanding the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) viral clearance profile is crucial to establish a re-testing plan on discharge and ending isolation of patients. We aimed to evaluate the number of days that a patient needed to achieve undetectable levels of SARS-CoV-2 in upper respiratory tract specimens (nasopharyngeal swab and/or an oropharyngeal swab). The clearance and persistence of viral RNA was evaluated in two groups of positive patients: those who achieved two negative reverse transcription-polymerase chain reaction (RT-PCR) tests and those who kept testing positive. Patients were organized thereafter in two subgroups, mild illness patients discharged home and inpatients who had moderate to severe illness. Results from RT-PCR tests were then correlated with results from the evaluation of the immune response. The study evidenced that most patients tested positive for more than 2 weeks and that persistence of viral RNA is not necessarily associated with severe disease but may result from a weaker immune response instead.

Keywords: COVID-19; RT-PCR; SARS-CoV-2; clearance.

MeSH terms

  • Adult
  • Aged
  • Aged, 80 and over
  • COVID-19 / diagnosis*
  • COVID-19 / immunology
  • COVID-19 / pathology
  • COVID-19 / virology
  • COVID-19 Testing / methods
  • Child
  • Convalescence
  • Cross-Sectional Studies
  • Female
  • Humans
  • Male
  • Middle Aged
  • Nasopharynx / virology
  • Oropharynx / virology
  • Patient Discharge / statistics & numerical data*
  • RNA, Viral / genetics*
  • Retrospective Studies
  • Reverse Transcriptase Polymerase Chain Reaction
  • SARS-CoV-2 / genetics*
  • SARS-CoV-2 / immunology
  • SARS-CoV-2 / pathogenicity
  • Severity of Illness Index

Substances

  • RNA, Viral