Synthesis and structure activity relationships of cyanopyridone based anti-tuberculosis agents

Eur J Med Chem. 2020 Sep 1:201:112450. doi: 10.1016/j.ejmech.2020.112450. Epub 2020 Jun 12.

Abstract

Mycobacterium tuberculosis, the causative agent of tuberculosis, relies on thymidylate kinase (MtbTMPK) for the synthesis of thymidine triphosphates and thus also DNA synthesis. Therefore, this enzyme constitutes a potential Achilles heel of the pathogen. Based on a previously reported MtbTMPK 6-aryl-substituted pyridone inhibitor and guided by two co-crystal structures of MtbTMPK with pyridone- and thymine-based inhibitors, we report the synthesis of a series of aryl-shifted cyanopyridone analogues. These compounds generally lacked significant MtbTMPK inhibitory potency, but some analogues did exhibit promising antitubercular activity. Analogue 11i demonstrated a 10-fold increased antitubercular activity (MIC H37Rv, 1.2 μM) compared to literature compound 5. Many analogues with whole-cell antimycobacterial activity were devoid of significant cytotoxicity.

Keywords: Inhibitors; Thymidylate kinase; Tuberculosis.

MeSH terms

  • Antitubercular Agents / chemical synthesis
  • Antitubercular Agents / metabolism
  • Antitubercular Agents / pharmacology*
  • Bacterial Proteins / antagonists & inhibitors*
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Catalytic Domain
  • Drug Design
  • Enzyme Inhibitors / chemical synthesis
  • Enzyme Inhibitors / pharmacology*
  • Microbial Sensitivity Tests
  • Molecular Docking Simulation
  • Molecular Structure
  • Mycobacterium tuberculosis / drug effects
  • Nitriles / chemical synthesis
  • Nitriles / metabolism
  • Nitriles / pharmacology*
  • Nucleoside-Phosphate Kinase / antagonists & inhibitors*
  • Nucleoside-Phosphate Kinase / chemistry
  • Nucleoside-Phosphate Kinase / metabolism
  • Protein Binding
  • Pyridones / chemical synthesis
  • Pyridones / metabolism
  • Pyridones / pharmacology*
  • Structure-Activity Relationship

Substances

  • Antitubercular Agents
  • Bacterial Proteins
  • Enzyme Inhibitors
  • Nitriles
  • Pyridones
  • Nucleoside-Phosphate Kinase
  • dTMP kinase