Architecture and functional dynamics of the pentafunctional AROM complex

Nat Chem Biol. 2020 Sep;16(9):973-978. doi: 10.1038/s41589-020-0587-9. Epub 2020 Jul 6.

Abstract

The AROM complex is a multifunctional metabolic machine with ten enzymatic domains catalyzing the five central steps of the shikimate pathway in fungi and protists. We determined its crystal structure and catalytic behavior, and elucidated its conformational space using a combination of experimental and computational approaches. We derived this space in an elementary approach, exploiting an abundance of conformational information from its monofunctional homologs in the Protein Data Bank. It demonstrates how AROM is optimized for spatial compactness while allowing for unrestricted conformational transitions and a decoupled functioning of its individual enzymatic entities. With this architecture, AROM poses a tractable test case for the effects of active site proximity on the efficiency of both natural metabolic systems and biotechnological pathway optimization approaches. We show that a mere colocalization of enzymes is not sufficient to yield a detectable improvement of metabolic throughput.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3-Phosphoshikimate 1-Carboxyvinyltransferase / chemistry
  • 3-Phosphoshikimate 1-Carboxyvinyltransferase / genetics
  • 3-Phosphoshikimate 1-Carboxyvinyltransferase / metabolism
  • Acanthamoeba castellanii / chemistry
  • Catalytic Domain
  • Chaetomium / chemistry
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism
  • Models, Molecular
  • Multienzyme Complexes / chemistry*
  • Multienzyme Complexes / genetics
  • Multienzyme Complexes / metabolism*
  • Phosphorus-Oxygen Lyases / chemistry
  • Phosphorus-Oxygen Lyases / genetics
  • Phosphorus-Oxygen Lyases / metabolism
  • Protein Conformation
  • Protein Domains
  • Scattering, Small Angle
  • Shikimic Acid / metabolism
  • Toxoplasma / chemistry
  • X-Ray Diffraction

Substances

  • Fungal Proteins
  • Multienzyme Complexes
  • Shikimic Acid
  • 3-Phosphoshikimate 1-Carboxyvinyltransferase
  • 3-dehydroquinate synthetase
  • Phosphorus-Oxygen Lyases