Characterization and crystal structure of prolyl endopeptidase from abalone (Haliotis discus hannai)

Food Chem. 2020 Dec 15:333:127452. doi: 10.1016/j.foodchem.2020.127452. Epub 2020 Jul 4.

Abstract

Aimed to study the characteristics of prolyl endopeptidase (PEP, EC 3.4.21.26) and its possible role in the degradation of collagen, we cloned the full-length cDNA sequence of PEP from abalone (Haliotis discus hannai) (Hdh-PEP). Recombinant Hdh-PEP (rHdh-PEP) was expressed in vitro, its enzymatic properties were detected, and its secondary structure was analyzed by Circular Dichroism (CD). We for the first time determined the 1.5 Å crystal structure of rHdh-PEP. The decomposition effect of rHdh-PEP on collagen peptides was analyzed. Our data revealed that the molecular weight of rHdh-PEP is 85 kDa, consisting of a catalytic domain and a β-propeller domain. The optimal pH and temperature of rHdh-PEP were pH 6.0 and 20 °C, respectively. Using small collagen peptides as substrates, HPLC-ESI-MS analysis confirmed that rHdh-PEP specifically cleaved at the carboxyl side of proline residues, suggesting its role in the degradation of collagen peptides during autolysis.

Keywords: Autolysis; Collagen peptide; Crystal structure; Haliotis discus hannai; Prolyl endopeptidase.

MeSH terms

  • Animals
  • Circular Dichroism
  • Collagen / metabolism*
  • Crystallography, X-Ray
  • DNA, Complementary / genetics
  • Gastropoda / enzymology*
  • Hydrogen-Ion Concentration
  • Proline / metabolism
  • Prolyl Oligopeptidases
  • Protein Structure, Secondary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Serine Endopeptidases / chemistry*
  • Serine Endopeptidases / genetics
  • Serine Endopeptidases / metabolism*
  • Spectrometry, Mass, Electrospray Ionization
  • Temperature

Substances

  • DNA, Complementary
  • Recombinant Proteins
  • Collagen
  • Proline
  • Serine Endopeptidases
  • Prolyl Oligopeptidases