Genetic and Chemical Screening in Human Blood Serum Reveals Unique Antibacterial Targets and Compounds against Klebsiella pneumoniae

Cell Rep. 2020 Jul 21;32(3):107927. doi: 10.1016/j.celrep.2020.107927.

Abstract

Antibiotics halt the growth of bacteria by targeting core, essential physiology that is required for life on standard microbiological media. Many more biochemical and virulence processes, however, are required for bacteria to cause infection in a host. Indeed, chemical inhibitors of the latter processes are overlooked using conventional antibiotic drug discovery approaches. Here, we use human blood serum as an alternative growth medium to explore new targets and compounds. High-throughput screening of genetic and chemical libraries identified compounds targeting biological activities required by Klebsiella pneumoniae to grow in serum, such as nucleobase biosynthesis and iron acquisition, and showed that serum can chemically transform compounds to reveal cryptic antibacterial activity. One of these compounds, ruthenium red, was effective in a rat bloodstream infection model. Our data demonstrate that human serum is an effective tool to find new chemical matter to address the current antibiotic resistance crisis.

Keywords: AMR; Klebsiella pneumoniae; antibacterial drug discovery; antibiotic; antibiotic resistance; bacterial pathogen; blood serum; bloodstream infection; high-throughput screening; serum.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Anti-Bacterial Agents / analysis*
  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / pharmacology*
  • DNA Damage
  • Disease Models, Animal
  • Drug Approval
  • Female
  • Genetic Testing*
  • Humans
  • Hydrolysis
  • Indoles / pharmacology
  • Iron / metabolism
  • Klebsiella Infections / blood
  • Klebsiella Infections / microbiology
  • Klebsiella pneumoniae / drug effects
  • Klebsiella pneumoniae / genetics*
  • Klebsiella pneumoniae / growth & development
  • Phenotype
  • Rats, Wistar
  • Ruthenium Red / pharmacology
  • Serum / microbiology*
  • Small Molecule Libraries / analysis*
  • Small Molecule Libraries / chemistry
  • Tryptophan / biosynthesis
  • Uracil / biosynthesis

Substances

  • Anti-Bacterial Agents
  • Indoles
  • Small Molecule Libraries
  • Ruthenium Red
  • Uracil
  • Tryptophan
  • Iron

Grants and funding