Catalytic Domain Plasticity of MKK7 Reveals Structural Mechanisms of Allosteric Activation and Diverse Targeting Opportunities

Cell Chem Biol. 2020 Oct 15;27(10):1285-1295.e4. doi: 10.1016/j.chembiol.2020.07.014. Epub 2020 Aug 11.

Abstract

MKK7 (MEK7) is a key regulator of the JNK stress signaling pathway and targeting MKK7 has been proposed as a chemotherapeutic strategy. Detailed understanding of the MKK7 structure and factors that affect its activity is therefore of critical importance. Here, we present a comprehensive set of MKK7 crystal structures revealing insights into catalytic domain plasticity and the role of the N-terminal regulatory helix, conserved in all MAP2Ks, mediating kinase activation. Crystal structures harboring this regulatory helix revealed typical structural features of active kinase, providing exclusively a first model of the MAP2K active state. A small-molecule screening campaign yielded multiple scaffolds, including type II irreversible inhibitors a binding mode that has not been reported previously. We also observed an unprecedented allosteric pocket located in the N-terminal lobe for the approved drug ibrutinib. Collectively, our structural and functional data expand and provide alternative targeting strategies for this important MAP2K kinase.

Keywords: JNK inhibition; MEK activation; allosteric inhibitor; allosteric regulation; covalent inhibitor; kinase activation; kinase inhibitor; kinase regularoty helix; mitogen-activated protein kinase kinase 7; type-II covalent inhibitor.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Allosteric Regulation / drug effects
  • Catalytic Domain / drug effects
  • Crystallography, X-Ray
  • Humans
  • MAP Kinase Kinase 7 / antagonists & inhibitors*
  • MAP Kinase Kinase 7 / chemistry
  • MAP Kinase Kinase 7 / metabolism
  • Male
  • Models, Molecular
  • Molecular Structure
  • Protein Kinase Inhibitors / chemistry
  • Protein Kinase Inhibitors / pharmacology*
  • THP-1 Cells

Substances

  • Protein Kinase Inhibitors
  • MAP Kinase Kinase 7
  • MAP2K7 protein, human