The complete chloroplast genome sequence of Habenaria ciliolaris (Orchidaceae)

Ming-Kun Chen; Juan Chen; Jie Zhou; Shan-Hu Ma; Qing-Dong Zheng; Tai-Xiang Xie; Ye Ai

doi:10.1080/23802359.2019.1692727

The complete chloroplast genome sequence of Habenaria ciliolaris (Orchidaceae)

Mitochondrial DNA B Resour. 2019 Nov 20;4(2):4132-4133. doi: 10.1080/23802359.2019.1692727.

Authors

Ming-Kun Chen¹, Juan Chen¹, Jie Zhou¹, Shan-Hu Ma¹, Qing-Dong Zheng¹, Tai-Xiang Xie¹, Ye Ai¹

Affiliation

¹ Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.

Abstract

Habenaria ciliolaris is a kind of orchid with ornamental value. In this study, we reported the complete chloroplast genome of H. ciliolaris. The complete chloroplast genome is 154,544 bp in length, consists of a pair of inverted repeat (IR, 25,455 bp) regions, a large single-copy region (LSC, 84,032 bp) and a small single-copy region (SSC, 19,602 bp). It contains 179 genes, including 133 protein-coding genes, 38 tRNAs, and 8 rRNAs. A maximum-likelihood phylogenetic analysis demonstrated a close relationship between H. ciliolaris and Habenaria radiata. This work will be valuable for genetic and phylogenetic studies on H. ciliolaris.

Keywords: Chloroplast genome; Habenaria ciliolaris; Illumina sequencing; phylogenetic.