NAT8 Variants, N-Acetylated Amino Acids, and Progression of CKD

Clin J Am Soc Nephrol. 2020 Dec 31;16(1):37-47. doi: 10.2215/CJN.08600520.

Abstract

Background and objectives: Genetic variants in NAT8, a liver- and kidney-specific acetyltransferase encoding gene, have been associated with eGFR and CKD in European populations. Higher circulating levels of two NAT8-associated metabolites, N-δ-acetylornithine and N-acetyl-1-methylhistidine, have been linked to lower eGFR and higher risk of incident CKD in the Black population. We aimed to expand upon prior studies to investigate associations between rs13538, a missense variant in NAT8, N-acetylated amino acids, and kidney failure in multiple, well-characterized cohorts.

Design, setting, participants, & measurements: We conducted analyses among participants with genetic and/or serum metabolomic data in the African American Study of Kidney Disease and Hypertension (AASK; n=962), the Atherosclerosis Risk in Communities (ARIC) study (n=1050), and BioMe, an electronic health record-linked biorepository (n=680). Separately, we evaluated associations between rs13538, urinary N-acetylated amino acids, and kidney failure in participants in the German CKD (GCKD) study (n=1624).

Results: Of 31 N-acetylated amino acids evaluated, the circulating and urinary levels of 14 were associated with rs13538 (P<0.05/31). Higher circulating levels of five of these N-acetylated amino acids, namely, N-δ-acetylornithine, N-acetyl-1-methylhistidine, N-acetyl-3-methylhistidine, N-acetylhistidine, and N2,N5-diacetylornithine, were associated with kidney failure, after adjustment for confounders and combining results in meta-analysis (combined hazard ratios per two-fold higher amino acid levels: 1.48, 1.44, 1.21, 1.65, and 1.41, respectively; 95% confidence intervals: 1.21 to 1.81, 1.22 to 1.70, 1.08 to 1.37, 1.29 to 2.10, and 1.17 to 1.71, respectively; all P values <0.05/14). None of the urinary levels of these N-acetylated amino acids were associated with kidney failure in the GCKD study.

Conclusions: We demonstrate significant associations between an NAT8 gene variant and 14 N-acetylated amino acids, five of which had circulation levels that were associated with kidney failure.

Keywords: AASK (African American Study of Kidney Disease and Hypertension); acetylation; amino acids; chronic kidney disease; end-stage renal disease; human genetics; metabolism.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • Acetyltransferases / genetics*
  • Adult
  • Aged
  • Aged, 80 and over
  • Amino Acids / urine*
  • Black People / genetics
  • Black or African American
  • Disease Progression
  • Female
  • Follow-Up Studies
  • Glomerular Filtration Rate
  • Histidine / analogs & derivatives
  • Histidine / urine
  • Humans
  • Kidney Failure, Chronic / genetics*
  • Kidney Failure, Chronic / physiopathology
  • Kidney Failure, Chronic / urine*
  • Male
  • Metabolomics
  • Methylhistidines / urine
  • Middle Aged
  • Ornithine / analogs & derivatives
  • Ornithine / urine
  • Polymorphism, Single Nucleotide
  • Prospective Studies
  • Randomized Controlled Trials as Topic
  • White People / genetics

Substances

  • Amino Acids
  • Methylhistidines
  • N(delta)-acetylornithine
  • N-acetyl-3-methylhistidine
  • Histidine
  • Ornithine
  • Acetyltransferases
  • NAT8 protein, human
  • N-acetylhistidine