Integrating metabolomics and network pharmacology to explore Rhizoma Coptidis extracts against sepsis-associated acute kidney injury

J Chromatogr B Analyt Technol Biomed Life Sci. 2021 Feb 1:1164:122525. doi: 10.1016/j.jchromb.2021.122525. Epub 2021 Jan 5.

Abstract

Sepsis remains the most common cause of acute kidney injury (AKI) in critically ill patients, increasing the risk of in-hospital and long-term death. Rhizoma Coptidis (RC), a classical traditional Chinese herb, exhibits anti-inflammatory and antioxidant properties in various diseases including sepsis. This study aimed to investigate the protective effects of RC extracts (RCE) against sepsis-associated acute kidney injury (SA-AKI) and explore the underlying mechanisms with metabolomics-based network pharmacology. The results showed that RCE improved renal function and histological injury and decreased reactive oxygen species (ROS) production in SA-AKI. Using ultra-high-performance liquid chromatography coupled with quadrupole-time-of-flight mass spectrometry (UHPLC-Q-TOF/MS), 25 differential metabolites were identified that had a close connection with the pathological processes of SA-AKI and the effects of RCE. Afterward, a compound-metabolite-target-disease network was constructed and 17 overlapping target proteins of the components of RCE, the differential metabolites, and the disease-related genes were discovered. Among these overlapping target proteins, RCE increased the nuclear translocation of nuclear factor-erythroid 2-related factor-2 (Nrf2), the protein expression of heme oxygenase-1 (HO-1), the mRNA expression of peroxisome proliferator activated receptor α (PPARα) and reduced nitric oxide synthase 2 (NOS2) activity. In addition, molecular docking revealed that both berberine and quercetin could bond with NOS2 and PPARα, respectively. Therefore, RCE demonstrated protective effects for SA-AKI through the regulation of metabolism and different signaling pathways.

Keywords: Acute kidney injury; Metabolomics; Network pharmacology; Rhizoma Coptidis; Sepsis.

MeSH terms

  • Acute Kidney Injury / etiology
  • Acute Kidney Injury / metabolism*
  • Animals
  • Chromatography, High Pressure Liquid / methods
  • Coptis chinensis
  • Drugs, Chinese Herbal / administration & dosage
  • Drugs, Chinese Herbal / pharmacology*
  • Heme Oxygenase-1 / metabolism
  • Kidney / drug effects
  • Kidney / metabolism
  • Male
  • Membrane Proteins / metabolism
  • Metabolome / drug effects*
  • Metabolomics / methods
  • Mice
  • Mice, Inbred C57BL
  • Molecular Docking Simulation
  • Nitric Oxide Synthase Type II / metabolism
  • Pharmacology, Clinical
  • Protective Agents / pharmacology*
  • Sepsis / complications
  • Sepsis / metabolism*

Substances

  • Drugs, Chinese Herbal
  • Membrane Proteins
  • Protective Agents
  • Coptidis rhizoma extract
  • Nitric Oxide Synthase Type II
  • Nos2 protein, mouse
  • Heme Oxygenase-1
  • Hmox1 protein, mouse