Functional genomics screen identifies proteostasis targets that modulate prion protein (PrP) stability

Cell Stress Chaperones. 2021 Mar;26(2):443-452. doi: 10.1007/s12192-021-01191-8. Epub 2021 Feb 5.

Abstract

Prion protein (PrP) adopts either a helical conformation (PrPC) or an alternative, beta sheet-rich, misfolded conformation (PrPSc). The PrPSc form has the ability to "infect" PrPC and force it into the misfolded state. Accumulation of PrPSc is associated with a number of lethal neurodegenerative disorders, including Creutzfeldt-Jacob disease (CJD). Knockout of PrPC protects cells and animals from PrPSc infection; thus, there is interest in identifying factors that regulate PrPC stability, with the therapeutic goal of reducing PrPC levels and limiting infection by PrPSc. Here, we assembled a short-hairpin RNA (shRNA) library composed of 25+ shRNA sequences for each of 133 protein homeostasis (aka proteostasis) factors, such as molecular chaperones and co-chaperones. This Proteostasis shRNA Library was used to identify regulators of PrPC stability in HEK293 Hu129M cells. Strikingly, the screen identified a number of Hsp70 family members and their co-chaperones as putative targets. Indeed, a chemical pan-inhibitor of Hsp70s reduced PrPC levels and limited conversion to PrPSc in N2a cells. These results implicate specific proteostasis sub-networks, especially the Hsp70 system, as potential new targets for the treatment of CJD. More broadly, the Proteostasis shRNA Library might be a useful tool for asking which proteostasis factors are important for a given protein.

Keywords: Chaperone networks; Drug targets; Heat shock protein 70; Neurodegeneration; Prion protein (PrP); shRNA.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • Cell Line, Tumor
  • Creutzfeldt-Jakob Syndrome / metabolism*
  • HEK293 Cells
  • HSP70 Heat-Shock Proteins / metabolism*
  • Humans
  • Mice
  • Prion Proteins / metabolism*
  • Protein Stability
  • Proteostasis*

Substances

  • HSP70 Heat-Shock Proteins
  • Prion Proteins