A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry-Based Glycoproteomics

Mol Cell Proteomics. 2021:20:100029. doi: 10.1074/mcp.R120.002277. Epub 2020 Dec 20.

Abstract

Glycosylation is a prevalent, yet heterogeneous modification with a broad range of implications in molecular biology. This heterogeneity precludes enrichment strategies that can be universally beneficial for all glycan classes. Thus, choice of enrichment strategy has profound implications on experimental outcomes. Here we review common enrichment strategies used in modern mass spectrometry-based glycoproteomic experiments, including lectins and other affinity chromatographies, hydrophilic interaction chromatography and its derivatives, porous graphitic carbon, reversible and irreversible chemical coupling strategies, and chemical biology tools that often leverage bioorthogonal handles. Interest in glycoproteomics continues to surge as mass spectrometry instrumentation and software improve, so this review aims to help equip researchers with the necessary information to choose appropriate enrichment strategies that best complement these efforts.

Keywords: Glycosylation; affinity chromatography; chemical biology; enrichment; glycopeptides; glycoproteomics; hydrophilic interaction chromatography (HILIC); lectins; mass spectrometry; strong anion exchange electrostatic repulsion hydrophilic interaction chromatography (SAX-ERLIC).

Publication types

  • Research Support, N.I.H., Extramural
  • Review

MeSH terms

  • Animals
  • Chromatography / methods
  • Glycomics / methods
  • Glycopeptides / analysis*
  • Glycopeptides / chemistry
  • Glycoproteins / analysis*
  • Glycoproteins / chemistry
  • Glycoside Hydrolases / chemistry
  • Graphite / chemistry
  • Humans
  • Lectins / chemistry
  • Mass Spectrometry / methods
  • Proteomics / methods

Substances

  • Glycopeptides
  • Glycoproteins
  • Lectins
  • Graphite
  • Glycoside Hydrolases