Machine learning models based on remote and proximal sensing as potential methods for in-season biomass yields prediction in commercial sorghum fields

PLoS One. 2021 Mar 25;16(3):e0249136. doi: 10.1371/journal.pone.0249136. eCollection 2021.

Abstract

Crop yield monitoring demonstrated the potential to improve agricultural productivity through improved crop breeding, farm management and commodity planning. Remote and proximal sensing offer the possibility to cut crop monitoring costs traditionally associated with surveys and censuses. Fraction of absorbed photosynthetically active radiation (fAPAR), chlorophyll concentration (CI) and normalized difference vegetation (NDVI) indices were used in crop monitoring, but their comparative performances in sorghum monitoring is lacking. This work aimed therefore at closing this gap by evaluating the performance of machine learning modelling of in-season sorghum biomass yields based on Sentinel-2-derived fAPAR and simpler high-throughput optical handheld meters-derived NDVI and CI calculated from sorghum plants reflectance. Bayesian ridge regression showed good cross-validated performance, and high reliability (R2 = 35%) and low bias (mean absolute prediction error, MAPE = 0.4%) during the validation step. Hand-held optical meter-derived CI and Sentinel-2-derived fAPAR showed comparable effects on machine learning performance, but CI outperformed NDVI and was therefore considered as a good alternative to Sentinel-2's fAPAR. The best times to sample the vegetation indices were the months of June (second half) and July. The results obtained in this work will serve several purposes including improvements in plant breeding, farming management and sorghum biomass yield forecasting at extension services and policy making levels.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bayes Theorem
  • Biomass*
  • Chlorophyll / chemistry
  • Crops, Agricultural
  • Machine Learning*
  • Remote Sensing Technology
  • Seasons
  • Sorghum / growth & development*
  • Sorghum / physiology

Substances

  • Chlorophyll

Grants and funding

This research was funded by the European Union, grant number 732064 (H2020- ICT-2016-1-innovation action through the project Data-driven Bioeconomy (www.databio.eu), the Ministero delle Politiche Agricole, Alimentari, Forestali e del Turismo (Rome, Italy) through the project Risorse GeneticheVegetali (RGV/FAO) 2017–2019, and the The project SYSTEMIC “an integrated approach to the challenge of sustainable food systems: adaptive and mitigatory strategies to address climate change and malnutrition", Knowledge hub on Nutrition and Food Security, has received funding from national research funding parties in Belgium (FWO), France (INRA), Germany (BLE), Italy (MIPAAF), Latvia (IZM), Norway (RCN), Portugal (FCT), and Spain (AEI) in a joint action of JPI HDHL, JPI-OCEANS and FACCE-JPI launched in 2019 under the ERA-NET ERA-HDHL (n° 696295). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript”.