Genome-wide identification of ascorbate-glutathione cycle gene families in soybean (Glycine max) reveals gene duplication events and specificity of gene members linked to development and stress conditions

Int J Biol Macromol. 2021 Sep 30:187:528-543. doi: 10.1016/j.ijbiomac.2021.07.103. Epub 2021 Jul 21.

Abstract

Ascorbate-glutathione (AsA-GSH) cycle plays an important role in tuning beneficial ROS accumulation for intracellular signals and imparts plant tolerance to oxidative stress by detoxifying excess of ROS. Here, we present genome-wide identification of AsA-GSH cycle genes (APX, MDHAR, DHAR, and GR) in several leguminous species and expression analyses in G. max during stress, germination and tissue development. Our data revealed 24 genes in Glycine genus against the maximum of 15 in other leguminous species, which was due to 9 pars of duplicated genes mostly originated from sub/neofunctionalization. Cytosolic APX and MDHAR genes were highly expressed in different tissues and physiological conditions. Germination induced genes encoding AsA-GSH proteins from different cell compartments, whereas vegetative phase (leaves) stimulated predominantly genes related to chloroplast/mitochondria proteins. Moreover, cytosolic APX-1, 2, MDHAR-1a, 1b and GR genes were the primary genes linked to senescence and biotic stresses, while stAPX-a, b and GR (from organelles) were the most abiotic stress related genes. Biotic and abiotic stress tolerant genotypes generally showed increased MDHAR, DHAR and/or GR mRNA levels compared to susceptible genotypes. Overall, these data clarified evolutionary events in leguminous plants and point to the functional specificity of duplicated genes of the AsA-GSH cycle in G. max.

Keywords: Cellular localization; Evolutionary events; Gene specificity; Leguminous species; Sub/neofunctionalization.

MeSH terms

  • Ascorbate Peroxidases / genetics
  • Ascorbate Peroxidases / metabolism
  • Ascorbic Acid / metabolism*
  • Evolution, Molecular*
  • Gene Duplication*
  • Gene Expression Regulation, Plant
  • Germination
  • Glutathione / metabolism*
  • Glutathione Reductase / genetics
  • Glutathione Reductase / metabolism
  • Glutathione Transferase / genetics
  • Glutathione Transferase / metabolism
  • Glycine max / genetics*
  • Glycine max / growth & development
  • Glycine max / metabolism
  • NADH, NADPH Oxidoreductases / genetics
  • NADH, NADPH Oxidoreductases / metabolism
  • Oxidative Stress*
  • Phylogeny
  • Plant Proteins / genetics*
  • Plant Proteins / metabolism
  • Reactive Oxygen Species / metabolism*

Substances

  • Plant Proteins
  • Reactive Oxygen Species
  • Ascorbate Peroxidases
  • NADH, NADPH Oxidoreductases
  • Glutathione Reductase
  • Glutathione Transferase
  • Glutathione
  • Ascorbic Acid