McsB forms a gated kinase chamber to mark aberrant bacterial proteins for degradation

Elife. 2021 Jul 30:10:e63505. doi: 10.7554/eLife.63505.

Abstract

In Gram-positive bacteria, the McsB protein arginine kinase is central to protein quality control, labeling aberrant molecules for degradation by the ClpCP protease. Despite its importance for stress response and pathogenicity, it is still elusive how the bacterial degradation labeling is regulated. Here, we delineate the mechanism how McsB targets aberrant proteins during stress conditions. Structural data reveal a self-compartmentalized kinase, in which the active sites are sequestered in a molecular cage. The 'closed' octamer interconverts with other oligomers in a phosphorylation-dependent manner and, unlike these 'open' forms, preferentially labels unfolded proteins. In vivo data show that heat-shock triggers accumulation of higher order oligomers, of which the octameric McsB is essential for surviving stress situations. The interconversion of open and closed oligomers represents a distinct regulatory mechanism of a degradation labeler, allowing the McsB kinase to adapt its potentially dangerous enzyme function to the needs of the bacterial cell.

Keywords: B. subtilis; biochemistry; chemical biology; mass photometry; molecular biophysics; protein phosphorylation; protein quality control; self-compartmentalization; structural biology; targeted protein degradation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillus subtilis / enzymology
  • Bacillus subtilis / genetics*
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Gene Expression Regulation, Bacterial
  • Phosphorylation
  • Protein Kinases / chemistry
  • Protein Kinases / genetics*
  • Protein Kinases / metabolism*

Substances

  • Bacterial Proteins
  • Protein Kinases
  • McsB protein, Bacillus subtilis

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.