Nucleotide proofreading functions by nematode RAD51 paralogs facilitate optimal RAD51 filament function

Nat Commun. 2021 Sep 20;12(1):5545. doi: 10.1038/s41467-021-25830-x.

Abstract

The RAD51 recombinase assembles as helical nucleoprotein filaments on single-stranded DNA (ssDNA) and mediates invasion and strand exchange with homologous duplex DNA (dsDNA) during homologous recombination (HR), as well as protection and restart of stalled replication forks. Strand invasion by RAD51-ssDNA complexes depends on ATP binding. However, RAD51 can bind ssDNA in non-productive ADP-bound or nucleotide-free states, and ATP-RAD51-ssDNA complexes hydrolyse ATP over time. Here, we define unappreciated mechanisms by which the RAD51 paralog complex RFS-1/RIP-1 limits the accumulation of RAD-51-ssDNA complexes with unfavorable nucleotide content. We find RAD51 paralogs promote the turnover of ADP-bound RAD-51 from ssDNA, in striking contrast to their ability to stabilize productive ATP-bound RAD-51 nucleoprotein filaments. In addition, RFS-1/RIP-1 inhibits binding of nucleotide-free RAD-51 to ssDNA. We propose that 'nucleotide proofreading' activities of RAD51 paralogs co-operate to ensure the enrichment of active, ATP-bound RAD-51 filaments on ssDNA to promote HR.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Diphosphate / pharmacology
  • Adenosine Triphosphate / pharmacology
  • Animals
  • Caenorhabditis elegans / metabolism*
  • Caenorhabditis elegans Proteins / metabolism*
  • DNA, Single-Stranded / metabolism
  • Fluorescence
  • Interferometry
  • Nucleotides / metabolism*
  • Protein Binding / drug effects
  • Protein Stability / drug effects
  • Rad51 Recombinase / chemistry*
  • Rad51 Recombinase / metabolism*
  • Sequence Homology, Amino Acid*
  • Species Specificity

Substances

  • Caenorhabditis elegans Proteins
  • DNA, Single-Stranded
  • Nucleotides
  • Adenosine Diphosphate
  • Adenosine Triphosphate
  • Rad51 Recombinase