Cell-surface Labeling via Bioorthogonal Host-Guest Chemistry

ACS Chem Biol. 2021 Nov 19;16(11):2124-2129. doi: 10.1021/acschembio.1c00494. Epub 2021 Oct 20.

Abstract

The widespread adoption of the bioorthogonal chemical reporter strategy revolutionized chemical biology. However, its translation to living mammals has been challenging, due to the size/stability properties of the chemical reporter group and/or the reaction kinetics of the labeling step. While developing new bioorthogonal reactions has been the traditional approach to optimizing the bioorthogonal chemical reporter strategy, here we present a different avenue, leveraging intermolecular interactions, to create bioorthogonal host-guest pairs. This approach, deemed "bioorthogonal complexation, does not rely on activated functional groups or second-order rate constants. We utilize the cucurbit[7]uril (CB[7]) scaffold to showcase bioorthogonal complexation and determine that medium-affinity (Ka ≈ 108-109 M-1) guests efficiently label cell surfaces and outperform the strain-promoted azide-alkyne cycloaddition. Finally, we implement bioorthogonal complexation in the chemical reporter strategy through the metabolic incorporation of ortho-carborane into cell-surface glycans and detection with a CB[7]-fluorescein conjugate.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bridged-Ring Compounds / chemistry*
  • Cell Membrane
  • Cycloaddition Reaction
  • Fluorescent Dyes / chemistry
  • Humans
  • Imidazoles / chemistry*
  • Jurkat Cells
  • Molecular Structure
  • Staining and Labeling

Substances

  • Bridged-Ring Compounds
  • Fluorescent Dyes
  • Imidazoles
  • cucurbit(7)uril