Bioinformatics analysis revealing prognostic significance of TIMP2 gene in breast cancer

Medicine (Baltimore). 2021 Oct 22;100(42):e27489. doi: 10.1097/MD.0000000000027489.

Abstract

Tissue inhibitor of metalloproteinases 2 (TIMP2) is a member of the TIMP gene family. Accumulated evidence indicates that TIMP2 plays a significant role in various tumor processes including cell growth, apoptosis, invasion, and metastasis. However, the expression patterns and exact roles of TIMP2 had not been elucidated in breast cancer. In our research, we evaluated the expression and prognostic value of TIMP2 in breast cancer through analyzing various databases including Oncomine, bc-GenExMiner, PrognoScan, UCSC Xena, Kaplan-Meier Plotter, and PPI network. The results showed that TIMP2 was down-regulated in various breast cancer subtypes. Additionally, TIMP2 was significantly associated with age, estrogen receptor status, basal-like group, triple-negative breast cancer, PAM50 subtypes, and RSSPC subtypes. Also, the expression of TIMP2 was related to overall survival with different clinical characteristics. We analyzed the co-expressed genes with TIMP2 and interaction information with other proteins. These results disclosed that TIMP2 might serve as a potential target and prognostic biomarker in breast cancer. However, additional research is required to demonstrate our findings and motivate the clinical importance of TIMP2 in breast cancer.

MeSH terms

  • Age Factors
  • Biomarkers, Tumor
  • Breast Neoplasms / genetics*
  • Breast Neoplasms / pathology*
  • Computational Biology
  • Down-Regulation / physiology
  • Female
  • Gene Expression Regulation, Neoplastic / genetics
  • Humans
  • Prognosis
  • Receptors, Estrogen / biosynthesis
  • Tissue Inhibitor of Metalloproteinase-2 / biosynthesis*
  • Triple Negative Breast Neoplasms / genetics
  • Triple Negative Breast Neoplasms / pathology

Substances

  • Biomarkers, Tumor
  • Receptors, Estrogen
  • TIMP2 protein, human
  • Tissue Inhibitor of Metalloproteinase-2