Integration of DNA sequencing with population pharmacokinetics to improve the prediction of irinotecan exposure in cancer patients

Br J Cancer. 2022 Mar;126(4):640-651. doi: 10.1038/s41416-021-01589-2. Epub 2021 Oct 26.

Abstract

Background: Irinotecan (CPT-11) is an anticancer agent widely used to treat adult solid tumours. Large interindividual variability in the clearance of irinotecan and SN-38, its active and toxic metabolite, results in highly unpredictable toxicity.

Methods: In 217 cancer patients treated with intravenous irinotecan single agent or in combination, germline DNA was used to interrogate the variation in 84 genes by next-generation sequencing. A stepwise analytical framework including a population pharmacokinetic model with SNP- and gene-based testing was used to identify demographic/clinical/genetic factors that influence the clearance of irinotecan and SN-38.

Results: Irinotecan clearance was influenced by rs4149057 in SLCO1B1, body surface area, and co-administration of 5-fluorouracil/leucovorin/bevacizumab. SN-38 clearance was influenced by rs887829 in UGT1A1, pre-treatment total bilirubin, and EGFR rare variant burden. Within each UGT1A1 genotype group, elevated pre-treatment total bilirubin and/or presence of at least one rare variant in EGFR resulted in significantly lower SN-38 clearance. The model reduced the interindividual variability in irinotecan clearance from 38 to 34% and SN-38 clearance from 49 to 32%.

Conclusions: This new model significantly reduced the interindividual variability in the clearance of irinotecan and SN-38. New genetic factors of variability in clearance have been identified.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Administration, Intravenous
  • Adult
  • Aged
  • Aged, 80 and over
  • Antineoplastic Combined Chemotherapy Protocols / adverse effects
  • Antineoplastic Combined Chemotherapy Protocols / pharmacokinetics*
  • Clinical Trials as Topic
  • ErbB Receptors / genetics
  • Female
  • Glucuronosyltransferase / genetics*
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Irinotecan / adverse effects
  • Irinotecan / pharmacokinetics*
  • Liver-Specific Organic Anion Transporter 1
  • Male
  • Middle Aged
  • Neoplasms / drug therapy
  • Neoplasms / genetics*
  • Pharmacogenomic Variants
  • Polymorphism, Single Nucleotide
  • Sequence Analysis, DNA / methods*

Substances

  • Liver-Specific Organic Anion Transporter 1
  • SLCO1B1 protein, human
  • Irinotecan
  • UGT1A1 enzyme
  • Glucuronosyltransferase
  • EGFR protein, human
  • ErbB Receptors