Result Turnaround Time of RT-PCR for SARS-CoV-2 is the Main Cause of COVID-19 Diagnostic Delay: A Country-Wide Observational Study of Mexico and Colombia

Rev Invest Clin. 2022 Mar 15;74(2):071-080. doi: 10.24875/RIC.21000542.

Abstract

Background: Delay in COVID-19 diagnosis due to late real-time reverse transcription-polymerase chain reaction reporting has been described to be an important cause of suboptimal COVID-19 surveillance and outbreak containment.

Objective: The objective of the study was to determine the duration of diagnostic delay due to test turnaround time and its association with marginalization status.

Methods: In this observational study using national open data of Mexico and Colombia, we quantified the delay in COVID-19 diagnosis that occurred in both countries. We considered two periods that contributed to the delay in diagnosis: the time from symptom onset until testing (delay-one) and test turnaround time (delay-two). Marginalization status was determined according to country-specific scores.

Results: Among 3,696,773 patients from Mexico and Colombia, delay-two was generally longer than delay-one. Median delay-one was 3 days and delay-two 7 days in Colombia, while in Mexico, they were 3 days and 4 days, respectively. In Colombia, worse marginalization status prolonged delaytwo. In Mexico, a lower number and percentage of rapid tests were performed in areas with worse marginalization.

Conclusion: Diagnostic delay was mostly due to test turnaround time. Marginalization status was an important barrier to diagnostic test access.

Keywords: COVID-19; Colombia; Mexico; Real-time polymerase chain reaction; SARS-CoV-2.

Publication types

  • Observational Study

MeSH terms

  • COVID-19 Testing
  • COVID-19* / diagnosis
  • Colombia
  • Delayed Diagnosis
  • Humans
  • Mexico / epidemiology
  • Reverse Transcriptase Polymerase Chain Reaction
  • SARS-CoV-2*
  • Sensitivity and Specificity