Docking-guided rational engineering of a macrolide glycosyltransferase glycodiversifies epothilone B

Commun Biol. 2022 Jan 27;5(1):100. doi: 10.1038/s42003-022-03047-y.

Abstract

Glycosyltransferases typically display acceptor substrate flexibility but more stringent donor specificity. BsGT-1 is a highly effective glycosyltransferase to glycosylate macrolides, including epothilones, promising antitumor compounds. Here, we show that BsGT-1 has three major regions significantly influencing the glycodiversification of epothilone B based on structural molecular docking, "hot spots" alanine scanning, and site saturation mutagenesis. Mutations in the PSPG-like motif region and the C2 loop region are more likely to expand donor preference; mutations of the flexible N3 loop region located at the mouth of the substrate-binding cavity produce novel epothilone oligosaccharides. These "hot spots" also functioned in homologues of BsGT-1. The glycosides showed significantly enhanced water solubility and decreased cytotoxicity, although the glycosyl appendages of epothilone B also reduced drug permeability and attenuated antitumor efficacy. This study laid a foundation for the rational engineering of other GTs to synthesize valuable small molecules.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Amino Acid Sequence
  • Epothilones / chemistry
  • Epothilones / metabolism*
  • Gene Expression Regulation, Enzymologic
  • Glucosyltransferases / metabolism*
  • Hep G2 Cells
  • Hepatocytes
  • Humans
  • Molecular Docking Simulation
  • Mutation
  • Protein Engineering

Substances

  • Epothilones
  • Glucosyltransferases
  • macrolide glycosyltransferase
  • epothilone B