Case report of Curtobacterium isolated from a catheter tip sample misidentified as Cronobacter

Lett Appl Microbiol. 2022 Aug;75(2):396-400. doi: 10.1111/lam.13741. Epub 2022 May 29.

Abstract

The Curtobacterium genus is a member of the family Microbacteriaceae, and Curtobacterium species are recognized as plant pathogens. The aim of this study was to investigate a dubious result of species identification for an infection located on a catheter tip of a patient with Covid-19. A strain isolated from a catheter tip sample, identified by VITEK® 2 as Cronobacter spp., was submitted to polyphasic analysis: Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) using VITEK® MS, real-time polymerase chain reaction targeting dnaG gene, and 16S rRNA full gene Sanger sequencing analysis for confirmation. The strain presented negative result using qPCR and could not identified by MALDI-TOF MS. 16S rRNA full gene Sanger sequencing analysis identified the strain as Curtobacterium spp. The Gram-variable characteristic (Gram-negative instead of Gram-positive) of the isolated strain was the responsible for the misidentification by VITEK® 2 and VITEK® MS did not identify the strain. 16S rRNA full gene sequencing analysis identified the strain as Curtobacterium genus, but other complementary techniques are necessary to identify at species level.

Keywords: 16S rRNA; Cronobacter; Curtobacterium; SARS-CoV-2; molecular diagnostics.

Publication types

  • Case Reports

MeSH terms

  • Actinomycetales* / genetics
  • Bacterial Typing Techniques / methods
  • COVID-19*
  • Catheters
  • Cronobacter*
  • Humans
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / methods

Substances

  • RNA, Ribosomal, 16S