A High Throughput Lipidomics Method Using Scheduled Multiple Reaction Monitoring

Biomolecules. 2022 May 16;12(5):709. doi: 10.3390/biom12050709.

Abstract

Lipid compositions of cells, tissues, and bio-fluids are complex, with varying concentrations and structural diversity making their identification challenging. Newer methods for comprehensive analysis of lipids are thus necessary. Herein, we propose a targeted-mass spectrometry based lipidomics screening method using a combination of variable retention time window and relative dwell time weightage. Using this method, we identified more than 1000 lipid species within 24-min. The limit of detection varied from the femtomolar to the nanomolar range. About 883 lipid species were detected with a coefficient of variance <30%. We used this method to identify plasma lipids altered due to vitamin B12 deficiency and found a total of 18 lipid species to be altered. Some of the lipid species with ω-6 fatty acid chains were found to be significantly increased while ω-3 decreased in vitamin B12 deficient samples. This method enables rapid screening of a large number of lipid species in a single experiment and would substantially advance our understanding of the role of lipids in biological processes.

Keywords: dwell time; isomers; lipidomics; mass spectrometry; plasma lipidome; scheduled MRM; variable RT window; vitamin B12.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Fatty Acids, Omega-3*
  • Lipidomics*
  • Lipids / analysis
  • Mass Spectrometry / methods
  • Vitamins

Substances

  • Fatty Acids, Omega-3
  • Lipids
  • Vitamins

Grants and funding

This research was funded by Council of Scientific and Industrial Research, CARDIOMED (Centre for Cardiovascular and Metabolic Disease Research), MLP 0122 and Phenome India—A long-term longitudinal observational cohort study of health outcomes, MLP 1811.