The presence of inter-limb asymmetries can influence strength performance and represent an injury risk factor for team sport athletes. The present study aimed to investigate the effects of changes in resistance loads using different assessment modalities on the magnitude and the direction of inter-limb asymmetry within the same leg. Fifteen young elite soccer players from the same professional academy performed rear-foot-elevated-split-squat-test at different loading conditions (body mass with no overload, 25% of body mass, 50% of body mass 50%), isokinetic knee flexor (concentric 30°·s-1, concentric 60°·s-1, eccentric 90°·s-1) and extensor (concentric 60°·s-1, eccentric 60°·s-1). The outcomes from the agreement analyses suggested moderate level agreement between body mass vs body mass 25% (Kappa = 0.46), with no agreement or fair agreement for the other between-assessment comparison. Our results demonstrated that the magnitude and direction of within-limb strength imbalances were inconsistent when compared within the same assessment under different resistance load conditions.