Blood Transcriptome Analysis of Beef Cow with Different Parity Revealed Candidate Genes and Gene Networks Regulating the Postpartum Diseases

Genes (Basel). 2022 Sep 19;13(9):1671. doi: 10.3390/genes13091671.

Abstract

Maternal parity is an important physiological factor influencing beef cow reproductive performance. However, there are few studies on the influence of different calving periods on early growth and postpartum diseases. Here, we conducted blood transcriptomic analysis on cows of different parities for gene discovery. We used Short Time Series Expression Miner (STEM) analysis to determine gene expression levels in cows of various parities and divided multiple parities into three main periods (nulliparous, primiparous, and multiparous) for subsequent analysis. Furthermore, the top 15,000 genes with the lowest median absolute deviation (MAD) were used to build a co-expression network using weighted correlation network analysis (WGCNA), and six independent modules were identified. Combing with Exon Wide Selection Signature (EWSS) and protein-protein interaction (PPI) analysis revealed that TPCN2, KIF22, MICAL3, RUNX2, PDE4A, TESK2, GPM6A, POLR1A, and KLHL6 involved in early growth and postpartum diseases. The GO and KEGG enrichment showed that the Parathyroid hormone synthesis, secretion, and action pathway and stem cell differentiation function-related pathways were enriched. Collectively, our study revealed candidate genes and gene networks regulating the early growth and postpartum diseases and provided new insights into the potential mechanism of reproduction advantages of different parity selection.

Keywords: Japanese black cattle; maternal parity; postpartum disease; transcriptome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cattle / genetics
  • Core Binding Factor Alpha 1 Subunit
  • DNA-Binding Proteins
  • Female
  • Gene Expression Profiling
  • Gene Regulatory Networks
  • Humans
  • Intracellular Signaling Peptides and Proteins
  • Kinesins
  • Lactation* / physiology
  • Parathyroid Hormone
  • Parity
  • Postpartum Period
  • Pregnancy
  • Protein Serine-Threonine Kinases
  • Puerperal Disorders*
  • Transcriptome / genetics

Substances

  • Core Binding Factor Alpha 1 Subunit
  • DNA-Binding Proteins
  • Intracellular Signaling Peptides and Proteins
  • KIF22 protein, human
  • Parathyroid Hormone
  • Protein Serine-Threonine Kinases
  • TESK2 protein, human
  • Kinesins

Grants and funding

The research was supported by the Inner Mongolia Natural Science Foundation project [2021ZD05], Inner Mongolia Natural Science Foundation project [2021ZD0009], Inner Mongolia science and technology plan project [2021GG0008], Inner Mongolia science and technology plan project [2021GG0025], Inner Mongolia science and technology plan project [2019ZD016], National Key research and development Program [2021YFD1200905]. We thank all the research assistants and laboratory technicians who contributed to this work.