Structure-Uptake Relationship Studies of Oxazolidinones in Gram-Negative ESKAPE Pathogens

J Med Chem. 2022 Oct 27;65(20):14144-14179. doi: 10.1021/acs.jmedchem.2c01349. Epub 2022 Oct 18.

Abstract

The clinical success of linezolid for treating Gram-positive infections paired with the high conservation of bacterial ribosomes predicts that if oxazolidinones were engineered to accumulate in Gram-negative bacteria, then this pharmacological class would find broad utility in eradicating infections. Here, we report an investigative study of a strategically designed library of oxazolidinones to determine the effects of molecular structure on accumulation and biological activity. Escherichia coli, Acinetobacter baumannii, and Pseudomonas aeruginosa strains with varying degrees of compromise (in efflux and outer membrane) were used to identify motifs that hinder permeation across the outer membrane and/or enhance efflux susceptibility broadly and specifically between species. The results illustrate that small changes in molecular structure are enough to overcome the efflux and/or permeation issues of this scaffold. Three oxazolidinone analogues (3e, 8d, and 8o) were identified that exhibit activity against all three pathogens assessed, a biological profile not observed for linezolid.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Anti-Bacterial Agents / chemistry
  • Escherichia coli
  • Gram-Negative Bacteria
  • Linezolid / pharmacology
  • Microbial Sensitivity Tests
  • Oxazolidinones* / chemistry
  • Oxazolidinones* / pharmacology

Substances

  • Oxazolidinones
  • Linezolid
  • Anti-Bacterial Agents