Halomonas binhaiensis sp. nov., isolated from saline-alkali soil

Int J Syst Evol Microbiol. 2022 Dec;72(12). doi: 10.1099/ijsem.0.005652.

Abstract

A Gram-stain-negative, aerobic and rod-shaped bacterium, strain Y2R2T, was isolated from a saline-alkali soil sample collected from Binhai New Area, Tianjin, PR China. Growth of strain Y2R2T was observed at 10-45 °C (optimum, 30 °C), at pH 6.0-11.0 (optimum, pH 9.0) and in the presence of 0-15 % (w/v) NaCl (optimum, 9.0 %). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain Y2R2T was affiliated with the genus Halomonas and showed the highest similarity to Halomonas huangheensis BJGMM-B45T (99.0%) and Halomonas cupida DSM 4740T (98.4%). The digital DNA-DNA hybridization and average nucleotide identity values of 21.0-22.8 % and 73.3-75.7 % with the closely related species H. huangheensis BJGMM-B45T, H. cupida DSM 4740T, H. ventosae AL12T, H. stenophila N12T and H. litopenaei SYSU ZJ2214T were lower than the threshold recommended for species discrimination.The major respiratory quinone of strain Y2R2T was Q-9 and the major cellular fatty acids consisted of C16 : 0, C19 : 0 cyclo ω8c and summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c). The DNA G+C content of strain Y2R2T was 57.0 mol%. On the basis of this polyphasic taxonomic study, strain Y2R2T is considered to represent a novel species of the genus Halomonas, for which the name Halomonas binhaiensis sp. nov. is proposed. The type strain is Y2R2T (=CGMCC 1.16974T=KCTC 72578T).

Keywords: Halomonas binhaiensis; Proteobacteria; taxonomy.

MeSH terms

  • Alkalies
  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • Fatty Acids* / chemistry
  • Halomonas*
  • Nucleic Acid Hybridization
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA

Substances

  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Alkalies
  • DNA, Bacterial