Fit-Seq2.0: An Improved Software for High-Throughput Fitness Measurements Using Pooled Competition Assays

J Mol Evol. 2023 Jun;91(3):334-344. doi: 10.1007/s00239-023-10098-0. Epub 2023 Mar 6.

Abstract

The fitness of a genotype is defined as its lifetime reproductive success, with fitness itself being a composite trait likely dependent on many underlying phenotypes. Measuring fitness is important for understanding how alteration of different cellular components affects a cell's ability to reproduce. Here, we describe an improved approach, implemented in Python, for estimating fitness in high throughput via pooled competition assays.

Keywords: Barcode; Fitness; High-throughput phenotyping; Pooled growth.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Genetic Fitness
  • Genotype
  • Phenotype
  • Reproduction*
  • Software*