Conformational exchange at a C2H2 zinc-binding site facilitates redox sensing by the PML protein

Structure. 2023 Sep 7;31(9):1086-1099.e6. doi: 10.1016/j.str.2023.06.014. Epub 2023 Jul 19.

Abstract

The promyelocytic leukemia protein, PML, plays a vital role in the cellular response to oxidative stress; however, the molecular mechanism of its action remains poorly understood. Here, we identify redox-sensitive sites of PML. A molecule of PML is cysteine-rich and contains three zinc-binding domains including RING, B-box1, and B-box2. Using in vitro assays, we have compared the sensitivity of the isolated RING and B-box1 domains and shown that B-box1 is more sensitive to oxidation. NMR studies of PML dynamics showed that one of the Zn-coordination sites within the B-box1 undergoes significant conformational exchange, revealing a hotspot for exposure of reactive cysteines. In agreement with the in vitro data, enhancement of the B-box1 Zn-coordination dynamics led to more efficient recruitment of PML into PML nuclear bodies in cells. Overall, our results suggest that the increased sensitivity of B-box1 to oxidative stress makes this domain an important redox-sensing component of PML.

Keywords: Carr-Purcell-Meiboom-Gill (CPMG); PML nuclear bodies; conformational change; molecular dynamics; nuclear magnetic resonance (NMR); oxidative stress; promyelocytic leukemia (PML); relaxation dispersion; zinc finger.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Binding Sites
  • Nuclear Proteins* / metabolism
  • Oxidation-Reduction
  • Promyelocytic Leukemia Protein / genetics
  • Promyelocytic Leukemia Protein / metabolism
  • Zinc* / metabolism

Substances

  • Nuclear Proteins
  • Zinc
  • Promyelocytic Leukemia Protein