Precision RNAi using synthetic shRNAmir target sites

Elife. 2023 Aug 8:12:RP84792. doi: 10.7554/eLife.84792.

Abstract

Loss-of-function genetic tools are widely applied for validating therapeutic targets, but their utility remains limited by incomplete on- and uncontrolled off-target effects. We describe artificial RNA interference (ARTi) based on synthetic, ultra-potent, off-target-free shRNAs that enable efficient and inducible suppression of any gene upon introduction of a synthetic target sequence into non-coding transcript regions. ARTi establishes a scalable loss-of-function tool with full control over on- and off-target effects.

Keywords: EGFR; KRAS; RNAi; cancer; cancer biology; human; loss-of-function; mouse; target validation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • RNA Interference*
  • RNA, Small Interfering / genetics

Substances

  • RNA, Small Interfering

Associated data

  • GEO/GSE218404
  • GEO/GSE218617