A new strategy to identify ADAM12 and PDGFRB as a novel prognostic biomarker for matrine regulates gastric cancer via high throughput chip mining and computational verification

Comput Biol Med. 2023 Nov:166:107562. doi: 10.1016/j.compbiomed.2023.107562. Epub 2023 Oct 11.

Abstract

Background: Gastric cancer is a life-threatening disease that poses a serious risk to human health. Although there are numerous molecular targets for gastric cancer in clinical practice, they often exhibit low specificity and sensitivity. Consequently, this can result in a low early diagnosis rate, delayed treatment, and poor prognosis for patients with gastric cancer. Hence, it remains crucial to identify more precise diagnostic markers for this disease.

Methods: This study utilized ceRNA chips and bioinformatics methods to investigate the key genes and mechanisms involved in matrine intervention in gastric cancer cells.

Results: ADAM12 and PDGFRB are the key genes that are down-regulated after matrine intervention in gastric cancer cells. By conducting bioinformatics analysis, two ceRNA regulatory axes were identified, which are associated with the prognosis of gastric cancer. These axes are lncRNA DGCR5/hsa-miR-206/ADAM12 and circRNA ITGA3/hsa-miR-24-3p/PDGFRB.

Conclusion: The low expression of ADAM12 may weaken the digestion of extracellular matrix (ECM) molecules, which can result in the invasion and metastasis of tumor cells. This occurs without the catalysis of ECM proteases, thereby impacting the invasion and metastasis of gastric cancer cells. Additionally, the analysis of immune infiltration suggests that ADAM12 and PDGFRB may influence changes in the tumor immune microenvironment, thereby affecting the occurrence and development of gastric cancer. This study contributes to a deeper understanding of the role of the matrine-related ceRNA network in gastric cancer, providing a reference for clinical diagnosis and treatment. It holds significant importance in discovering new drug treatment targets.

Keywords: ADAM12; Gastric cancer; Immune infiltration; Matrine; PDGFRB; Prognostic signatures; ceRNA network.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ADAM12 Protein* / genetics
  • ADAM12 Protein* / metabolism
  • Alkaloids / pharmacology
  • Biomarkers, Tumor* / genetics
  • Biomarkers, Tumor* / metabolism
  • Cell Line, Tumor
  • Computational Biology / methods
  • Data Mining / methods
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Matrines
  • Prognosis
  • Quinolizines / pharmacology
  • Receptor, Platelet-Derived Growth Factor beta* / genetics
  • Receptor, Platelet-Derived Growth Factor beta* / metabolism
  • Stomach Neoplasms* / drug therapy
  • Stomach Neoplasms* / genetics
  • Stomach Neoplasms* / metabolism

Substances

  • ADAM12 Protein
  • ADAM12 protein, human
  • Alkaloids
  • Biomarkers, Tumor
  • Matrines
  • PDGFRB protein, human
  • Quinolizines
  • Receptor, Platelet-Derived Growth Factor beta