High-content multimodal analysis supports the IL-7/IL-7 receptor axis as a relevant therapeutic target in primary Sjögren's syndrome

J Autoimmun. 2024 Dec:149:103147. doi: 10.1016/j.jaut.2023.103147. Epub 2023 Dec 18.

Abstract

Objective: While the involvement of IL-7/IL-7R axis in pSS has been described in relation to T cells, little is known about the contribution of this pathway in relationship with other immune cells, and its implication in autoimmunity. Using high-content multiomics data, we aimed at characterizing IL-7R expressing cells and the involvement of IL-7/IL-7R pathway in pSS pathophysiology.

Methods: An IL-7 signature established using RNA-sequencing of human PBMCs incubated with IL-7 was applied to 304 pSS patients, and on RNA-Seq datasets from tissue biopsies. High-content immunophenotyping using flow and imaging mass cytometry was developed to characterize peripheral and in situ IL-7R expression.

Results: We identified a blood 4-gene IL-7 module (IKZF4, KIAA0040, PGAP1 and SOS1) associated with anti-SSA/Ro positiveness in patients as well as disease activity, and a tissue 5-gene IL-7 module (IL7R, PCED1B, TNFSF8, ADAM19, MYBL1) associated with infiltration severity. We confirmed expression of IL-7R on T cells subsets, and further observed upregulation of IL-7R on double-negative (DN) B cells, and especially DN2 B cells. IL-7R expression was increased in pSS compared to sicca patients with variations seen according to the degree of infiltration. When expressed, IL-7R was mainly found on epithelial cells, CD4+ and CD8+ T cells, switched memory B cells, DN B cells and M1 macrophages.

Conclusion: This exhaustive characterization of the IL-7/IL-7R pathway in pSS pathophysiology established that two IL-7 gene modules discriminate pSS patients with a high IL-7 axis involvement. Their use could guide the implementation of an anti-IL-7R targeted therapy in a precision medicine approach.

Keywords: Anti-IL-7R therapy; IL-7 pathway; Imaging mass cytometry; Multiomics; Primary Sjögren's syndrome.

MeSH terms

  • Adult
  • Aged
  • Biomarkers
  • Female
  • Gene Expression Profiling
  • Humans
  • Immunophenotyping
  • Interleukin-7 Receptor alpha Subunit
  • Interleukin-7* / metabolism
  • Male
  • Middle Aged
  • Molecular Targeted Therapy
  • Receptors, Interleukin-7* / genetics
  • Receptors, Interleukin-7* / metabolism
  • Signal Transduction
  • Sjogren's Syndrome* / genetics
  • Sjogren's Syndrome* / immunology
  • Sjogren's Syndrome* / metabolism

Substances

  • Interleukin-7
  • Receptors, Interleukin-7
  • IL7 protein, human
  • IL7R protein, human
  • Biomarkers
  • Interleukin-7 Receptor alpha Subunit