A landscape of mouse mitochondrial small non-coding RNAs

PLoS One. 2024 Jan 2;19(1):e0293644. doi: 10.1371/journal.pone.0293644. eCollection 2024.

Abstract

Small non-coding RNAs (ncRNAs), particularly miRNAs, play key roles in a plethora of biological processes both in health and disease. Although largely operative in the cytoplasm, emerging data indicate their shuttling in different subcellular compartments. Given the central role of mitochondria in cellular homeostasis, here we systematically profiled their small ncRNAs content across mouse tissues that largely rely on mitochondria functioning. The ubiquitous presence of piRNAs in mitochondria (mitopiRNA) of somatic tissues is reported for the first time, supporting the idea of a strong and general connection between mitochondria biology and piRNA pathways. Then, we found groups of tissue-shared and tissue-specific mitochondrial miRNAs (mitomiRs), potentially related to the "basic" or "cell context dependent" biology of mitochondria. Overall, this large data platform will be useful to deepen the knowledge about small ncRNAs processing and their governed regulatory networks contributing to mitochondria functions.

MeSH terms

  • Animals
  • Cytoplasm / metabolism
  • Mice
  • MicroRNAs* / genetics
  • MicroRNAs* / metabolism
  • Mitochondria / genetics
  • Mitochondria / metabolism
  • RNA, Small Interfering / genetics
  • RNA, Small Interfering / metabolism
  • RNA, Small Untranslated* / genetics
  • RNA, Small Untranslated* / metabolism

Substances

  • RNA, Small Untranslated
  • MicroRNAs
  • RNA, Small Interfering

Grants and funding

The research was funded by the University of Campania “Luigi Vanvitelli” within VALERE 2019 program giving support to the ICOM project. The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.